Session info
## R version 4.3.1 (2023-06-16 ucrt)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 11 x64 (build 22621)
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## Matrix products: default
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##
## locale:
## [1] LC_COLLATE=English_United Kingdom.utf8 LC_CTYPE=English_United Kingdom.utf8
## [3] LC_MONETARY=English_United Kingdom.utf8 LC_NUMERIC=C
## [5] LC_TIME=English_United Kingdom.utf8
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## time zone: Asia/Bangkok
## tzcode source: internal
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## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] survminer_0.4.9 ggpubr_0.6.0 lmtest_0.9-40 zoo_1.8-12
## [5] cowplot_1.1.1 broom_1.0.5 survival_3.5-7 corrplot_0.92
## [9] granova_2.2 car_3.1-2 carData_3.0-5 pwrss_0.3.1
## [13] ggsci_3.0.0 lubridate_1.9.3 forcats_1.0.0 stringr_1.5.1
## [17] purrr_1.0.2 readr_2.1.4 tidyr_1.3.0 tibble_3.2.1
## [21] ggplot2_3.4.4 tidyverse_2.0.0 dplyr_1.1.3 org.Hs.eg.db_3.17.0
## [25] AnnotationDbi_1.64.0 IRanges_2.34.1 S4Vectors_0.38.2 Biobase_2.60.0
## [29] BiocGenerics_0.46.0 clusterProfiler_4.8.3 edgeR_4.0.0 limma_3.56.2
##
## loaded via a namespace (and not attached):
## [1] splines_4.3.1 bitops_1.0-7 ggplotify_0.1.2 polyclip_1.10-6
## [5] lifecycle_1.0.4 Rdpack_2.6 rstatix_0.7.2 lattice_0.21-8
## [9] vroom_1.6.4 MASS_7.3-60 backports_1.4.1 magrittr_2.0.3
## [13] sass_0.4.7 rmarkdown_2.25 jquerylib_0.1.4 yaml_2.3.7
## [17] DBI_1.1.3 RColorBrewer_1.1-3 abind_1.4-5 zlibbioc_1.46.0
## [21] downlit_0.4.3 ggraph_2.1.0 RCurl_1.98-1.13 yulab.utils_0.1.0
## [25] tweenr_2.0.2 GenomeInfoDbData_1.2.11 KMsurv_0.1-5 enrichplot_1.20.3
## [29] ggrepel_0.9.4 tidytree_0.4.5 testthat_3.2.0 commonmark_1.9.0
## [33] codetools_0.2-19 ggtext_0.1.2 DOSE_3.26.2 xml2_1.3.5
## [37] ggforce_0.4.1 tidyselect_1.2.0 aplot_0.2.2 farver_2.1.1
## [41] viridis_0.6.4 jsonlite_1.8.7 tidygraph_1.2.3 tools_4.3.1
## [45] treeio_1.24.3 snow_0.4-4 Rcpp_1.0.11 glue_1.6.2
## [49] mnormt_2.1.1 gridExtra_2.3 xfun_0.41 mgcv_1.8-42
## [53] qvalue_2.32.0 GenomeInfoDb_1.38.0 withr_2.5.2 fastmap_1.1.1
## [57] fansi_1.0.5 truncnorm_1.0-9 digest_0.6.33 timechange_0.2.0
## [61] R6_2.5.1 gridGraphics_0.5-1 colorspace_2.1-0 GO.db_3.17.0
## [65] markdown_1.11 jpeg_0.1-10 RSQLite_2.3.3 utf8_1.2.4
## [69] generics_0.1.3 data.table_1.14.8 graphlayouts_1.0.2 httr_1.4.7
## [73] scatterpie_0.2.1 pkgconfig_2.0.3 gtable_0.3.4 blob_1.2.4
## [77] XVector_0.40.0 survMisc_0.5.6 brio_1.1.3 shadowtext_0.1.2
## [81] htmltools_0.5.7 bookdown_0.36 fgsea_1.26.0 scales_1.2.1
## [85] png_0.1-8 ggfun_0.1.3 knitr_1.45 km.ci_0.5-6
## [89] rstudioapi_0.15.0 tzdb_0.4.0 reshape2_1.4.4 nlme_3.1-162
## [93] randomNames_1.5-0.0 cachem_1.0.8 parallel_4.3.1 HDO.db_0.99.1
## [97] pillar_1.9.0 grid_4.3.1 vctrs_0.6.4 toOrdinal_1.3-0.0
## [101] xtable_1.8-4 evaluate_0.23 cli_3.6.1 locfit_1.5-9.8
## [105] compiler_4.3.1 rlang_1.1.2 crayon_1.5.2 ggsignif_0.6.4
## [109] labeling_0.4.3 plyr_1.8.9 fs_1.6.3 psych_2.3.9
## [113] stringi_1.8.1 viridisLite_0.4.2 BiocParallel_1.34.2 nleqslv_3.3.4
## [117] munsell_0.5.0 Biostrings_2.68.1 detectnorm_1.0.0 lazyeval_0.2.2
## [121] GOSemSim_2.26.1 Matrix_1.6-3 hms_1.1.3 patchwork_1.1.3
## [125] bit64_4.0.5 KEGGREST_1.42.0 highr_0.10 rbibutils_2.2.16
## [129] gridtext_0.1.5 igraph_1.5.1 memoise_2.0.1 bslib_0.6.0
## [133] ggtree_3.8.2 fastmatch_1.1-4 bit_4.0.5 downloader_0.4
## [137] ape_5.7-1 gson_0.1.0